test_spiculated Namespace Reference

Variables
string	hpc_cluster_ip = "192.168.45.21"
string	phantoms_folder = "/gpfs_projects/VICTRE/pivotal/phantoms/withLesion/"
string	density = "dense"
int	seed = 2132574818
string	phantom_file = phantoms_folder+density+"/pc_{:d}_crop.raw.gz"
float	size = 0.5
string	lesion_file = "lesions/spiculated/mass_-308854003_size{:.2f}.h5"
list	lesion_only_materials
tuple	pline
dictionary	roi_sizes
int	n = 2

Variable Documentation

string test_spiculated.density = "dense"

string test_spiculated.hpc_cluster_ip = "192.168.45.21"

string test_spiculated.lesion_file = "lesions/spiculated/mass_-308854003_size{:.2f}.h5"

list test_spiculated.lesion_only_materials

Initial value:

= [{"material": "./Victre/projection/material/air__5-120keV.mcgpu.gz",
                          "density": 0.0012,
                          "voxel_id": [0, 1, 2, 29, 33, 88, 40, 125, 150, 225, 95, 50, 65, 66]
                          },
                         {"material": "./Victre/projection/material/glandular__5-120keV.mcgpu.gz",
                          "density": 1.06,
                             "voxel_id": [200]
                          },
                         {"material": "./Victre/projection/material/CalciumOxalate__5-120keV.mcgpu.gz",
                          "density": 1.781,
                             "voxel_id": [250]
                          }
                         ]

int test_spiculated.n = 2

string test_spiculated.phantom_file = phantoms_folder+density+"/pc_{:d}_crop.raw.gz"

string test_spiculated.phantoms_folder = "/gpfs_projects/VICTRE/pivotal/phantoms/withLesion/"

tuple test_spiculated.pline

Initial value:

= Victre.Pipeline(ip=hpc_cluster_ip,
                        seed=seed,
                        phantom_file=phantom_file,
                        lesion_file=lesion_file,
                        spectrum="W28kVp_Rh50um_Be1mm_Al2mm_MTF",  # aluminium spectrum
                        materials=lesion_only_materials)

test_spiculated.roi_sizes

Initial value:

= {Constants.VICTRE_SPICULATED: [109, 109, 9],
             Constants.VICTRE_CLUSTERCALC: [65, 65, 5]}

int test_spiculated.seed = 2132574818

float test_spiculated.size = 0.5